1 HOK comparison of CASAL and Casal2 model configurations

This document compares the results of at least 2 CASAL model configurations (base and at least one sensitivity) and up to 8 Casal2 model configurations (3 BetaDiff, 2 CppAD, and 3 ADOL-C).

The CASAL model sensitivity 1 has a smaller minimisation tolerance value than the CASAL base model (1e-9 vs. 1e-6).

The Casal2 ADOL-C and BetaDiff low tolerance models have a smaller tolerance value than the CASAL base model (1e-9 vs. 1e-6). The Casal2 CppAD models have a tolerance value of 1e-9.

1.1 HOK model characteristics

The main characteristics of the Test Case HOK (hoki) CASAL model are:

  • one stock, ages 1 - 17
  • one area, although many characteristics are separated into "east" and "west"
  • years 1972 - 2018, projection years 2019 - 2023
  • five time steps: Oct_Nov, Dec_Mar, Apr_Jun, End_Jun, and Jul_Sep
  • five stock categories: west.sa, east.cr, west.cr, west.wc, and east.cs (labeled "stock.area")
  • five migration processes, which have age-specific proportions specified
  • sex-specific natural mortality-at-age is double exponential
  • area-specific von Bertalanffy age-length relationship
  • area-specific length-weight relationship (\(W = aL^b\))
  • area-specific Beverton-Holt stock-recruitment relationships, with steepness (h) 0.75
  • ageing error is specified
  • surveys with double normal selectivity
  • six area-specific fisheries with double normal selectivity

Observation data include:

  • survey indices
  • survey proportions-at-age
  • fishery proportions-at-age

Parameters estimated include:

  • area-specific B0
  • parameters for the natural mortality-at-age ogive
  • catchability (q) for the surveys
  • parameters for the selectivity curves for the surveys
  • parameters for the selectivity curves for the fisheries
  • migration proportions by age
  • area-specific YCS (recruitment deviations)

1.2 R environment

## [1] "Mon Aug  3 12:02:36 2020"
## R version 3.6.0 (2019-04-26)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
## 
## Matrix products: default
## BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
## 
## locale:
##  [1] LC_CTYPE=en_NZ.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_NZ.UTF-8        LC_COLLATE=en_NZ.UTF-8    
##  [5] LC_MONETARY=en_NZ.UTF-8    LC_MESSAGES=en_NZ.UTF-8   
##  [7] LC_PAPER=en_GB.UTF_8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] casal2_1.0     casal_2.30     devtools_2.3.1 usethis_1.6.1  rlist_0.4.6.1 
##  [6] ggthemes_4.2.0 gridExtra_2.3  coda_0.19-3    ggmcmc_1.4.1   ggplot2_3.3.2 
## [11] tidyr_1.1.0    dplyr_1.0.1   
## 
## loaded via a namespace (and not attached):
##  [1] tidyselect_1.1.0   xfun_0.16          remotes_2.2.0      purrr_0.3.4       
##  [5] lattice_0.20-38    testthat_2.3.2     colorspace_1.4-1   vctrs_0.3.2       
##  [9] generics_0.0.2     htmltools_0.5.0    yaml_2.2.1         rlang_0.4.7       
## [13] pkgbuild_1.1.0     pillar_1.4.6       glue_1.4.1         withr_2.2.0       
## [17] RColorBrewer_1.1-2 sessioninfo_1.1.1  lifecycle_0.2.0    plyr_1.8.6        
## [21] stringr_1.4.0      munsell_0.5.0      gtable_0.3.0       evaluate_0.14     
## [25] memoise_1.1.0      knitr_1.29         GGally_1.4.0       callr_3.4.3       
## [29] ps_1.3.3           fansi_0.4.1        Rcpp_1.0.5         scales_1.1.1      
## [33] backports_1.1.8    desc_1.2.0         pkgload_1.1.0      fs_1.5.0          
## [37] digest_0.6.25      stringi_1.4.6      processx_3.4.3     grid_3.6.0        
## [41] rprojroot_1.3-2    cli_2.0.2          tools_3.6.0        magrittr_1.5      
## [45] tibble_3.0.3       crayon_1.3.4       pkgconfig_2.0.3    ellipsis_0.3.1    
## [49] data.table_1.13.0  prettyunits_1.1.1  assertthat_0.2.1   rmarkdown_2.3     
## [53] reshape_0.8.8      R6_2.4.1           compiler_3.6.0

1.3 CASAL and Casal2 model output

source('../../R-functions/report_read_in_CASAL_MPD_files.R')
source('../../R-functions/report_read_in_Casal2_MPD_files.R')

1.4 Tables

Tables of parameter estimates and objective function components for the CASAL and Casal2 model MPD results

CASAL parameter estimates
rownames Base_Model Sensitivity_1 Percent_Diff
q[CSacous].q                0.43120 0.43120 0.000
q[WCacous].q                0.30030 0.30020 0.033
q[CRsum].q                0.07431 0.07431 0.000
q[SAsum].q                0.05925 0.05925 0.000
q[SAaut].q                0.06717 0.06717 0.000
relative_abundance[CRsumbio].cv_process_error 0.14050 0.14050 0.000
relative_abundance[SAsumbio].cv_process_error 0.43060 0.43060 0.000
log_B0_total                  14.34000 14.34000 0.000
B0_prop_stock1                  0.32870 0.32870 0.000
natural_mortality.all              0.29600 0.29600 0.000
selectivity[Wspsl].shift_a          -0.21740 -0.21740 0.000
recruitment[E].YCS1             0.44780 0.44780 0.000
recruitment[E].YCS2             0.72680 0.72680 0.000
recruitment[E].YCS3             0.78450 0.78450 0.000
recruitment[E].YCS4             1.36000 1.36000 0.000
recruitment[E].YCS5             0.98770 0.98780 -0.010
recruitment[E].YCS6             0.32930 0.32930 0.000
recruitment[E].YCS7             0.44720 0.44720 0.000
recruitment[E].YCS8             0.26560 0.26560 0.000
recruitment[E].YCS9             0.43420 0.43420 0.000
recruitment[E].YCS10            0.48800 0.48800 0.000
recruitment[E].YCS11            0.39570 0.39570 0.000
recruitment[E].YCS12            0.21790 0.21790 0.000
recruitment[E].YCS13            1.03600 1.03600 0.000
recruitment[E].YCS14            0.95890 0.95890 0.000
recruitment[E].YCS15            0.42900 0.42900 0.000
recruitment[E].YCS16            0.13810 0.13810 0.000
recruitment[E].YCS17            0.37500 0.37500 0.000
recruitment[E].YCS18            0.39170 0.39160 0.026
recruitment[E].YCS19            0.38310 0.38310 0.000
recruitment[E].YCS20            0.56290 0.56290 0.000
recruitment[E].YCS21            0.26400 0.26400 0.000
recruitment[E].YCS22            0.28450 0.28450 0.000
recruitment[E].YCS23            0.45000 0.45000 0.000
recruitment[E].YCS24            0.25310 0.25310 0.000
recruitment[E].YCS25            0.06000 0.06000 0.000
recruitment[E].YCS26            0.46220 0.46220 0.000
recruitment[E].YCS27            0.16160 0.16160 0.000
recruitment[E].YCS28            0.26690 0.26690 0.000
recruitment[E].YCS29            0.50040 0.50040 0.000
recruitment[E].YCS30            0.52000 0.52000 0.000
recruitment[E].YCS31            0.50880 0.50880 0.000
recruitment[E].YCS32            0.60060 0.60060 0.000
recruitment[E].YCS33            0.52210 0.52210 0.000
recruitment[E].YCS34            0.37300 0.37300 0.000
recruitment[E].YCS35            0.52680 0.52680 0.000
recruitment[E].YCS36            0.15860 0.15860 0.000
recruitment[E].YCS37            0.66060 0.66060 0.000
recruitment[E].YCS38            0.15600 0.15600 0.000
recruitment[E].YCS39            0.18580 0.18580 0.000
recruitment[E].YCS40            0.73060 0.73060 0.000
recruitment[E].YCS41            0.73910 0.73900 0.014
recruitment[E].YCS42            1.19500 1.19500 0.000
recruitment[W].YCS1             0.45700 0.45700 0.000
recruitment[W].YCS2             0.82220 0.82220 0.000
recruitment[W].YCS3             0.67000 0.67000 0.000
recruitment[W].YCS4             0.65390 0.65390 0.000
recruitment[W].YCS5             0.46590 0.46590 0.000
recruitment[W].YCS6             0.51510 0.51510 0.000
recruitment[W].YCS7             0.57820 0.57820 0.000
recruitment[W].YCS8             0.47330 0.47330 0.000
recruitment[W].YCS9             0.87190 0.87190 0.000
recruitment[W].YCS10            0.83640 0.83650 -0.012
recruitment[W].YCS11            0.32020 0.32020 0.000
recruitment[W].YCS12            0.16500 0.16500 0.000
recruitment[W].YCS13            1.47600 1.47600 0.000
recruitment[W].YCS14            0.77270 0.77280 -0.013
recruitment[W].YCS15            0.08135 0.08135 0.000
recruitment[W].YCS16            0.08158 0.08158 0.000
recruitment[W].YCS17            0.89280 0.89280 0.000
recruitment[W].YCS18            1.26800 1.26800 0.000
recruitment[W].YCS19            0.37720 0.37720 0.000
recruitment[W].YCS20            0.95940 0.95940 0.000
recruitment[W].YCS21            0.22110 0.22110 0.000
recruitment[W].YCS22            0.19720 0.19720 0.000
recruitment[W].YCS23            0.23790 0.23800 -0.042
recruitment[W].YCS24            0.20290 0.20290 0.000
recruitment[W].YCS25            0.06000 0.06000 0.000
recruitment[W].YCS26            0.37300 0.37300 0.000
recruitment[W].YCS27            0.09548 0.09548 0.000
recruitment[W].YCS28            0.79560 0.79560 0.000
recruitment[W].YCS29            0.46520 0.46520 0.000
recruitment[W].YCS30            0.51660 0.51660 0.000
recruitment[W].YCS31            0.51130 0.51130 0.000
recruitment[W].YCS32            0.75540 0.75540 0.000
recruitment[W].YCS33            0.63890 0.63890 0.000
recruitment[W].YCS34            0.61690 0.61690 0.000
recruitment[W].YCS35            0.57840 0.57840 0.000
recruitment[W].YCS36            0.14550 0.14550 0.000
recruitment[W].YCS37            0.97480 0.97480 0.000
recruitment[W].YCS38            0.16020 0.16020 0.000
recruitment[W].YCS39            0.24440 0.24440 0.000
recruitment[W].YCS40            2.19700 2.19700 0.000
recruitment[W].YCS41            2.15200 2.15200 0.000
recruitment[W].YCS42            1.19500 1.19500 0.000
migration[Whome].rates_all1       0.32780 0.32780 0.000
migration[Whome].rates_all2       0.30780 0.30780 0.000
migration[Whome].rates_all3       0.47620 0.47620 0.000
migration[Whome].rates_all4       0.14180 0.14180 0.000
migration[Whome].rates_all5       0.46850 0.46840 0.021
migration[Whome].rates_all6       0.74980 0.75030 -0.067
migration[Whome].rates_all7       0.79470 0.78840 0.793
migration[Whome].rates_all8       1.00000 1.00000 0.000
migration[Espmg].rates_all1       0.00566 0.00566 0.000
migration[Espmg].rates_all2       0.16020 0.16020 0.000
migration[Espmg].rates_all3       0.32410 0.32410 0.000
migration[Espmg].rates_all4       0.43120 0.43120 0.000
migration[Espmg].rates_all5       0.38550 0.38550 0.000
migration[Espmg].rates_all6       0.46540 0.46530 0.021
migration[Espmg].rates_all7       0.59900 0.59900 0.000
migration[Espmg].rates_all8       0.60780 0.60780 0.000
migration[Wspmg].rates_all1       0.10610 0.10610 0.000
migration[Wspmg].rates_all2       0.28770 0.28770 0.000
migration[Wspmg].rates_all3       0.27080 0.27080 0.000
migration[Wspmg].rates_all4       0.45530 0.45530 0.000
migration[Wspmg].rates_all5       0.48470 0.48470 0.000
migration[Wspmg].rates_all6       0.52710 0.52710 0.000
migration[Wspmg].rates_all7       0.66060 0.66060 0.000
migration[Wspmg].rates_all8       0.59630 0.59630 0.000
selectivity[Enspsl].all1             3.56700 3.56700 0.000
selectivity[Enspsl].all2             1.22100 1.22100 0.000
selectivity[Enspsl].all3             15.71000 15.71000 0.000
selectivity[Wnspsl].all1             5.34100 5.34100 0.000
selectivity[Wnspsl].all2             2.83900 2.83900 0.000
selectivity[Wnspsl].all3             13.38000 13.38000 0.000
selectivity[Espsl].all1             10.88000 10.88000 0.000
selectivity[Espsl].all2             11.68000 11.68000 0.000
selectivity[Espsl].all3             3.98200 3.98200 0.000
selectivity[CRsl].all1             1.00000 1.00000 0.000
selectivity[CRsl].all2             1.00000 1.00000 0.000
selectivity[CRsl].all3             9.30000 9.30000 0.000
selectivity[SAsl].all1             14.25000 14.25000 0.000
selectivity[SAsl].all2             8.75500 8.75600 -0.011
selectivity[SAsl].all3             1.31500 1.31500 0.000
Casal2 parameter estimates
rownames betadiff_casal_flags_on betadiff_casal_flags_off betadiff_casal_flags_on_low_tol cppad_casal_flags_on cppad_casal_flags_off adolc_casal_flags_on adolc_casal_flags_off adolc_casal_flags_on_low_tol
catchability[CSacous].q                0.42724 0.42724 0.43116 0.43116 0.43116 0.42724 0.42724 0.43116
catchability[WCacous].q                0.31284 0.31284 0.30024 0.30024 0.30024 0.31284 0.31284 0.30024
catchability[CRsum].q                0.06832 0.06832 0.07431 0.07431 0.07431 0.06832 0.06832 0.07431
catchability[SAsum].q                0.06717 0.06717 0.05925 0.05925 0.05925 0.06717 0.06717 0.05925
catchability[SAaut].q                0.07578 0.07578 0.06717 0.06717 0.06717 0.07578 0.07578 0.06717
observation[CRsumbio].process_error    0.14094 0.14094 0.14048 0.14048 0.14048 0.14094 0.14094 0.14048
observation[SAsumbio].process_error    0.42364 0.42364 0.43061 0.43061 0.43061 0.42364 0.42364 0.43061
process[recruit_E].b0               548395.00000 548393.00000 555125.00000 555125.00000 555125.00000 548396.00000 548396.00000 555125.00000
process[recruit_W].b0               1082670.00000 1082670.00000 1133680.00000 1133680.00000 1133680.00000 1082670.00000 1082670.00000 1133680.00000
process[Instant_mortality].m{west.sa}              0.31271 0.31271 0.29598 0.29598 0.29598 0.31271 0.31271 0.29598
time_varying[shifted_mu].a                -0.22921 -0.22921 -0.21744 -0.21744 -0.21744 -0.22921 -0.22921 -0.21744
process[recruit_E].ycs_values{1975} 0.44538 0.44537 0.44782 0.44782 0.44782 0.44538 0.44538 0.44782
process[recruit_E].ycs_values{1976} 0.72939 0.72939 0.72680 0.72680 0.72680 0.72939 0.72939 0.72680
process[recruit_E].ycs_values{1977} 0.79231 0.79231 0.78454 0.78454 0.78454 0.79231 0.79232 0.78454
process[recruit_E].ycs_values{1978} 1.38644 1.38644 1.36001 1.36001 1.36001 1.38645 1.38645 1.36001
process[recruit_E].ycs_values{1979} 1.00265 1.00264 0.98776 0.98776 0.98776 1.00264 1.00265 0.98776
process[recruit_E].ycs_values{1980} 0.33437 0.33437 0.32932 0.32932 0.32932 0.33437 0.33437 0.32932
process[recruit_E].ycs_values{1981} 0.45502 0.45502 0.44723 0.44723 0.44723 0.45502 0.45502 0.44723
process[recruit_E].ycs_values{1982} 0.26974 0.26974 0.26556 0.26556 0.26556 0.26974 0.26974 0.26556
process[recruit_E].ycs_values{1983} 0.44106 0.44106 0.43418 0.43418 0.43418 0.44106 0.44106 0.43418
process[recruit_E].ycs_values{1984} 0.49412 0.49412 0.48804 0.48804 0.48804 0.49412 0.49412 0.48804
process[recruit_E].ycs_values{1985} 0.40010 0.40010 0.39570 0.39570 0.39570 0.40010 0.40010 0.39570
process[recruit_E].ycs_values{1986} 0.21978 0.21978 0.21791 0.21791 0.21791 0.21978 0.21978 0.21791
process[recruit_E].ycs_values{1987} 1.04131 1.04130 1.03640 1.03640 1.03640 1.04131 1.04131 1.03640
process[recruit_E].ycs_values{1988} 0.96346 0.96346 0.95891 0.95891 0.95891 0.96345 0.96345 0.95891
process[recruit_E].ycs_values{1989} 0.43095 0.43095 0.42899 0.42899 0.42899 0.43095 0.43095 0.42899
process[recruit_E].ycs_values{1990} 0.13797 0.13797 0.13810 0.13810 0.13810 0.13797 0.13796 0.13810
process[recruit_E].ycs_values{1991} 0.37385 0.37385 0.37500 0.37500 0.37500 0.37385 0.37385 0.37500
process[recruit_E].ycs_values{1992} 0.38858 0.38858 0.39164 0.39164 0.39164 0.38858 0.38858 0.39164
process[recruit_E].ycs_values{1993} 0.37995 0.37995 0.38310 0.38310 0.38310 0.37995 0.37995 0.38310
process[recruit_E].ycs_values{1994} 0.55794 0.55794 0.56285 0.56285 0.56285 0.55794 0.55794 0.56285
process[recruit_E].ycs_values{1995} 0.26178 0.26178 0.26399 0.26399 0.26399 0.26178 0.26178 0.26399
process[recruit_E].ycs_values{1996} 0.28251 0.28251 0.28447 0.28447 0.28447 0.28251 0.28251 0.28447
process[recruit_E].ycs_values{1997} 0.44781 0.44781 0.45003 0.45003 0.45003 0.44781 0.44781 0.45003
process[recruit_E].ycs_values{1998} 0.25264 0.25264 0.25307 0.25307 0.25307 0.25264 0.25264 0.25307
process[recruit_E].ycs_values{1999} 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000
process[recruit_E].ycs_values{2000} 0.46013 0.46013 0.46220 0.46220 0.46220 0.46013 0.46013 0.46220
process[recruit_E].ycs_values{2001} 0.16086 0.16086 0.16165 0.16165 0.16165 0.16086 0.16086 0.16165
process[recruit_E].ycs_values{2002} 0.26611 0.26611 0.26689 0.26689 0.26689 0.26610 0.26611 0.26689
process[recruit_E].ycs_values{2003} 0.49959 0.49959 0.50038 0.50038 0.50038 0.49959 0.49959 0.50038
process[recruit_E].ycs_values{2004} 0.52053 0.52053 0.52003 0.52003 0.52003 0.52053 0.52053 0.52003
process[recruit_E].ycs_values{2005} 0.50764 0.50764 0.50882 0.50882 0.50882 0.50764 0.50764 0.50882
process[recruit_E].ycs_values{2006} 0.60013 0.60013 0.60055 0.60055 0.60055 0.60013 0.60013 0.60055
process[recruit_E].ycs_values{2007} 0.52087 0.52087 0.52215 0.52215 0.52215 0.52087 0.52087 0.52215
process[recruit_E].ycs_values{2008} 0.37115 0.37115 0.37300 0.37300 0.37300 0.37115 0.37115 0.37300
process[recruit_E].ycs_values{2009} 0.52790 0.52790 0.52681 0.52681 0.52681 0.52789 0.52789 0.52681
process[recruit_E].ycs_values{2010} 0.15695 0.15695 0.15864 0.15864 0.15864 0.15695 0.15695 0.15864
process[recruit_E].ycs_values{2011} 0.66047 0.66047 0.66058 0.66058 0.66058 0.66047 0.66047 0.66058
process[recruit_E].ycs_values{2012} 0.15554 0.15554 0.15600 0.15600 0.15600 0.15554 0.15554 0.15600
process[recruit_E].ycs_values{2013} 0.18518 0.18518 0.18584 0.18584 0.18584 0.18518 0.18518 0.18584
process[recruit_E].ycs_values{2014} 0.72844 0.72844 0.73062 0.73062 0.73062 0.72844 0.72844 0.73062
process[recruit_E].ycs_values{2015} 0.75586 0.75586 0.73900 0.73900 0.73900 0.75587 0.75586 0.73900
process[recruit_E].ycs_values{2016} 1.18886 1.18886 1.19515 1.19515 1.19515 1.18886 1.18886 1.19515
process[recruit_W].ycs_values{1975} 0.45869 0.45869 0.45702 0.45702 0.45702 0.45870 0.45870 0.45702
process[recruit_W].ycs_values{1976} 0.81422 0.81422 0.82218 0.82218 0.82218 0.81422 0.81422 0.82218
process[recruit_W].ycs_values{1977} 0.68515 0.68515 0.67000 0.67000 0.67000 0.68515 0.68515 0.67000
process[recruit_W].ycs_values{1978} 0.66937 0.66937 0.65390 0.65390 0.65390 0.66937 0.66937 0.65390
process[recruit_W].ycs_values{1979} 0.47307 0.47307 0.46590 0.46590 0.46590 0.47307 0.47307 0.46590
process[recruit_W].ycs_values{1980} 0.52064 0.52064 0.51512 0.51512 0.51512 0.52064 0.52064 0.51512
process[recruit_W].ycs_values{1981} 0.58344 0.58344 0.57824 0.57824 0.57824 0.58344 0.58344 0.57824
process[recruit_W].ycs_values{1982} 0.47462 0.47462 0.47328 0.47328 0.47328 0.47462 0.47462 0.47328
process[recruit_W].ycs_values{1983} 0.87309 0.87309 0.87192 0.87192 0.87192 0.87309 0.87309 0.87192
process[recruit_W].ycs_values{1984} 0.83633 0.83633 0.83646 0.83646 0.83646 0.83633 0.83633 0.83646
process[recruit_W].ycs_values{1985} 0.31942 0.31942 0.32024 0.32024 0.32024 0.31942 0.31942 0.32024
process[recruit_W].ycs_values{1986} 0.16493 0.16493 0.16497 0.16497 0.16497 0.16493 0.16493 0.16497
process[recruit_W].ycs_values{1987} 1.48007 1.48007 1.47555 1.47555 1.47555 1.48007 1.48007 1.47555
process[recruit_W].ycs_values{1988} 0.77454 0.77454 0.77276 0.77276 0.77276 0.77454 0.77454 0.77276
process[recruit_W].ycs_values{1989} 0.08148 0.08148 0.08134 0.08134 0.08134 0.08148 0.08148 0.08134
process[recruit_W].ycs_values{1990} 0.08183 0.08183 0.08158 0.08158 0.08158 0.08183 0.08183 0.08158
process[recruit_W].ycs_values{1991} 0.89197 0.89197 0.89280 0.89280 0.89280 0.89197 0.89197 0.89280
process[recruit_W].ycs_values{1992} 1.26757 1.26757 1.26778 1.26778 1.26778 1.26757 1.26758 1.26778
process[recruit_W].ycs_values{1993} 0.37652 0.37652 0.37722 0.37722 0.37722 0.37652 0.37652 0.37722
process[recruit_W].ycs_values{1994} 0.95579 0.95579 0.95939 0.95939 0.95939 0.95579 0.95579 0.95939
process[recruit_W].ycs_values{1995} 0.22026 0.22026 0.22113 0.22113 0.22113 0.22026 0.22027 0.22113
process[recruit_W].ycs_values{1996} 0.19632 0.19632 0.19718 0.19718 0.19718 0.19632 0.19632 0.19718
process[recruit_W].ycs_values{1997} 0.23643 0.23643 0.23795 0.23795 0.23795 0.23643 0.23643 0.23795
process[recruit_W].ycs_values{1998} 0.20041 0.20041 0.20292 0.20292 0.20292 0.20041 0.20041 0.20292
process[recruit_W].ycs_values{1999} 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000
process[recruit_W].ycs_values{2000} 0.37089 0.37089 0.37304 0.37304 0.37304 0.37089 0.37089 0.37304
process[recruit_W].ycs_values{2001} 0.09506 0.09506 0.09548 0.09548 0.09548 0.09506 0.09506 0.09548
process[recruit_W].ycs_values{2002} 0.79553 0.79553 0.79558 0.79558 0.79558 0.79553 0.79553 0.79558
process[recruit_W].ycs_values{2003} 0.46570 0.46570 0.46517 0.46517 0.46517 0.46570 0.46570 0.46517
process[recruit_W].ycs_values{2004} 0.51761 0.51761 0.51662 0.51662 0.51662 0.51761 0.51761 0.51662
process[recruit_W].ycs_values{2005} 0.51305 0.51305 0.51126 0.51126 0.51126 0.51305 0.51306 0.51126
process[recruit_W].ycs_values{2006} 0.75475 0.75475 0.75544 0.75544 0.75544 0.75475 0.75475 0.75544
process[recruit_W].ycs_values{2007} 0.63692 0.63692 0.63891 0.63891 0.63891 0.63692 0.63692 0.63891
process[recruit_W].ycs_values{2008} 0.61564 0.61564 0.61686 0.61686 0.61686 0.61564 0.61564 0.61686
process[recruit_W].ycs_values{2009} 0.57305 0.57305 0.57841 0.57841 0.57841 0.57306 0.57306 0.57841
process[recruit_W].ycs_values{2010} 0.14618 0.14618 0.14547 0.14547 0.14547 0.14618 0.14618 0.14547
process[recruit_W].ycs_values{2011} 0.96708 0.96708 0.97478 0.97478 0.97478 0.96708 0.96708 0.97478
process[recruit_W].ycs_values{2012} 0.15909 0.15909 0.16016 0.16016 0.16016 0.15909 0.15909 0.16016
process[recruit_W].ycs_values{2013} 0.24402 0.24402 0.24444 0.24444 0.24444 0.24402 0.24402 0.24444
process[recruit_W].ycs_values{2014} 2.18651 2.18651 2.19657 2.19657 2.19657 2.18651 2.18651 2.19657
process[recruit_W].ycs_values{2015} 2.14758 2.14758 2.15204 2.15204 2.15204 2.14758 2.14758 2.15204
process[recruit_W].ycs_values{2016} 1.18909 1.18909 1.19539 1.19539 1.19539 1.18909 1.18909 1.19539
selectivity[sel_Whome].v{1}             0.32193 0.32193 0.32783 0.32783 0.32783 0.32193 0.32193 0.32783
selectivity[sel_Whome].v{2}             0.28491 0.28492 0.30778 0.30778 0.30778 0.28491 0.28491 0.30778
selectivity[sel_Whome].v{3}             0.45972 0.45972 0.47620 0.47620 0.47620 0.45972 0.45973 0.47620
selectivity[sel_Whome].v{4}             0.13549 0.13549 0.14184 0.14184 0.14184 0.13549 0.13549 0.14184
selectivity[sel_Whome].v{5}             0.43782 0.43782 0.46836 0.46836 0.46836 0.43782 0.43782 0.46836
selectivity[sel_Whome].v{6}             0.70820 0.70822 0.75026 0.75026 0.75026 0.70822 0.70820 0.75026
selectivity[sel_Whome].v{7}             0.99991 0.99990 0.78841 0.78841 0.78841 0.99990 0.99987 0.78841
selectivity[sel_Espmg].v{1}             0.00564 0.00564 0.00566 0.00566 0.00566 0.00564 0.00564 0.00566
selectivity[sel_Espmg].v{2}             0.15912 0.15912 0.16021 0.16021 0.16021 0.15912 0.15912 0.16021
selectivity[sel_Espmg].v{3}             0.32082 0.32082 0.32411 0.32411 0.32411 0.32082 0.32082 0.32411
selectivity[sel_Espmg].v{4}             0.42547 0.42547 0.43123 0.43123 0.43123 0.42547 0.42547 0.43123
selectivity[sel_Espmg].v{5}             0.37953 0.37953 0.38546 0.38546 0.38546 0.37953 0.37953 0.38546
selectivity[sel_Espmg].v{6}             0.45876 0.45876 0.46535 0.46535 0.46535 0.45876 0.45876 0.46535
selectivity[sel_Espmg].v{7}             0.59081 0.59081 0.59902 0.59902 0.59902 0.59081 0.59081 0.59902
selectivity[sel_Espmg].v{8}             0.61100 0.61100 0.60778 0.60778 0.60778 0.61100 0.61100 0.60778
selectivity[sel_Wspmg].v{1}             0.10556 0.10556 0.10614 0.10614 0.10614 0.10556 0.10556 0.10614
selectivity[sel_Wspmg].v{2}             0.29136 0.29136 0.28774 0.28774 0.28774 0.29136 0.29136 0.28774
selectivity[sel_Wspmg].v{3}             0.27068 0.27068 0.27076 0.27076 0.27076 0.27068 0.27068 0.27076
selectivity[sel_Wspmg].v{4}             0.45527 0.45527 0.45525 0.45525 0.45525 0.45527 0.45527 0.45525
selectivity[sel_Wspmg].v{5}             0.48421 0.48421 0.48466 0.48466 0.48466 0.48421 0.48421 0.48466
selectivity[sel_Wspmg].v{6}             0.52496 0.52496 0.52711 0.52711 0.52711 0.52496 0.52496 0.52711
selectivity[sel_Wspmg].v{7}             0.65298 0.65298 0.66062 0.66062 0.66062 0.65298 0.65298 0.66062
selectivity[sel_Wspmg].v{8}             0.60153 0.60153 0.59627 0.59627 0.59627 0.60153 0.60153 0.59627
selectivity[Enspsl].mu               3.57318 3.57318 3.56716 3.56716 3.56716 3.57318 3.57318 3.56716
selectivity[Enspsl].sigma_l          1.22245 1.22245 1.22108 1.22108 1.22108 1.22245 1.22245 1.22108
selectivity[Enspsl].sigma_r          50.00000 50.00000 15.71370 15.71370 15.71370 50.00000 50.00000 15.71370
selectivity[Wnspsl].mu               5.32840 5.32840 5.34117 5.34117 5.34117 5.32840 5.32840 5.34117
selectivity[Wnspsl].sigma_l          2.77815 2.77815 2.83934 2.83934 2.83934 2.77816 2.77816 2.83934
selectivity[Wnspsl].sigma_r          49.99970 49.99820 13.37890 13.37890 13.37890 49.99920 49.99960 13.37890
selectivity[Espsl].mu               11.25670 11.25670 10.87880 10.87880 10.87880 11.25670 11.25670 10.87880
selectivity[Espsl].sigma_l          10.86740 10.86730 11.67750 11.67750 11.67750 10.86740 10.86740 11.67750
selectivity[Espsl].sigma_r          4.02625 4.02625 3.98165 3.98165 3.98165 4.02626 4.02624 3.98165
selectivity[CRsl].mu               1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000
selectivity[CRsl].sigma_l          46.52210 46.52230 46.01900 25.50000 25.50000 46.52210 46.52220 46.02300
selectivity[CRsl].sigma_r          10.09280 10.09280 9.30042 9.30042 9.30042 10.09290 10.09280 9.30042
selectivity[SAsl].mu               14.86850 14.86850 14.25230 14.25230 14.25230 14.86850 14.86850 14.25230
selectivity[SAsl].sigma_l          8.69468 8.69468 8.75558 8.75558 8.75558 8.69468 8.69468 8.75558
selectivity[SAsl].sigma_r          1.00000 1.00000 1.31519 1.31519 1.31519 1.00000 1.00000 1.31519
Casal2 parameter estimates: Percent Difference from betadiff_casal_flags_on
rownames betadiff_casal_flags_on betadiff_casal_flags_off betadiff_casal_flags_on_low_tol cppad_casal_flags_on cppad_casal_flags_off adolc_casal_flags_on adolc_casal_flags_off adolc_casal_flags_on_low_tol
catchability[CSacous].q                0.000 -0.001 -0.918 -0.918 -0.918 0.000 0.000 -0.918
catchability[WCacous].q                0.000 -0.000 4.027 4.027 4.027 0.000 0.000 4.027
catchability[CRsum].q                0.000 -0.000 -8.765 -8.765 -8.765 0.000 0.000 -8.765
catchability[SAsum].q                0.000 -0.000 11.797 11.797 11.797 0.001 0.000 11.797
catchability[SAaut].q                0.000 -0.000 11.363 11.363 11.363 0.001 0.000 11.363
observation[CRsumbio].process_error    0.000 0.001 0.328 0.328 0.328 0.000 0.001 0.328
observation[SAsumbio].process_error    0.000 0.000 -1.645 -1.645 -1.645 0.000 -0.000 -1.645
process[recruit_E].b0               0.000 0.000 -1.227 -1.227 -1.227 -0.000 -0.000 -1.227
process[recruit_W].b0               0.000 0.000 -4.712 -4.712 -4.712 0.000 0.000 -4.712
process[Instant_mortality].m{west.sa}              0.000 0.000 5.349 5.349 5.349 0.000 0.000 5.349
time_varying[shifted_mu].a                0.000 0.000 5.135 5.135 5.135 0.000 0.000 5.135
process[recruit_E].ycs_values{1975} 0.000 0.001 -0.548 -0.548 -0.548 -0.001 -0.001 -0.548
process[recruit_E].ycs_values{1976} 0.000 0.000 0.355 0.355 0.355 -0.000 0.000 0.355
process[recruit_E].ycs_values{1977} 0.000 0.001 0.981 0.981 0.981 0.000 -0.001 0.981
process[recruit_E].ycs_values{1978} 0.000 0.000 1.906 1.906 1.906 -0.001 -0.001 1.906
process[recruit_E].ycs_values{1979} 0.000 0.001 1.485 1.485 1.485 0.001 0.000 1.485
process[recruit_E].ycs_values{1980} 0.000 0.000 1.512 1.512 1.512 0.000 -0.000 1.512
process[recruit_E].ycs_values{1981} 0.000 0.000 1.712 1.712 1.712 0.000 -0.000 1.712
process[recruit_E].ycs_values{1982} 0.000 0.000 1.551 1.551 1.551 0.000 0.000 1.551
process[recruit_E].ycs_values{1983} 0.000 0.000 1.559 1.559 1.559 0.000 -0.000 1.559
process[recruit_E].ycs_values{1984} 0.000 0.000 1.229 1.229 1.229 0.000 -0.000 1.229
process[recruit_E].ycs_values{1985} 0.000 0.000 1.102 1.102 1.102 0.000 0.000 1.102
process[recruit_E].ycs_values{1986} 0.000 0.000 0.850 0.850 0.850 -0.000 0.000 0.850
process[recruit_E].ycs_values{1987} 0.000 0.001 0.472 0.472 0.472 0.000 0.000 0.472
process[recruit_E].ycs_values{1988} 0.000 -0.000 0.471 0.471 0.471 0.000 0.000 0.471
process[recruit_E].ycs_values{1989} 0.000 0.000 0.455 0.455 0.455 0.000 -0.000 0.455
process[recruit_E].ycs_values{1990} 0.000 0.000 -0.101 -0.101 -0.101 0.000 0.001 -0.101
process[recruit_E].ycs_values{1991} 0.000 0.000 -0.307 -0.307 -0.307 0.000 0.000 -0.307
process[recruit_E].ycs_values{1992} 0.000 0.000 -0.787 -0.787 -0.787 0.000 0.000 -0.787
process[recruit_E].ycs_values{1993} 0.000 0.000 -0.831 -0.831 -0.831 0.000 0.000 -0.831
process[recruit_E].ycs_values{1994} 0.000 0.000 -0.880 -0.880 -0.880 0.000 0.000 -0.880
process[recruit_E].ycs_values{1995} 0.000 0.000 -0.843 -0.843 -0.843 0.000 0.000 -0.843
process[recruit_E].ycs_values{1996} 0.000 0.000 -0.695 -0.695 -0.695 0.000 0.000 -0.695
process[recruit_E].ycs_values{1997} 0.000 -0.000 -0.496 -0.496 -0.496 0.000 0.000 -0.496
process[recruit_E].ycs_values{1998} 0.000 0.000 -0.170 -0.170 -0.170 0.000 0.000 -0.170
process[recruit_E].ycs_values{1999} 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
process[recruit_E].ycs_values{2000} 0.000 0.000 -0.449 -0.449 -0.449 0.000 0.000 -0.449
process[recruit_E].ycs_values{2001} 0.000 0.001 -0.489 -0.489 -0.489 0.001 0.000 -0.489
process[recruit_E].ycs_values{2002} 0.000 0.000 -0.294 -0.294 -0.294 0.000 0.000 -0.294
process[recruit_E].ycs_values{2003} 0.000 0.000 -0.159 -0.159 -0.159 0.000 0.000 -0.159
process[recruit_E].ycs_values{2004} 0.000 0.000 0.096 0.096 0.096 0.000 0.000 0.096
process[recruit_E].ycs_values{2005} 0.000 0.000 -0.233 -0.233 -0.233 0.000 0.000 -0.233
process[recruit_E].ycs_values{2006} 0.000 0.000 -0.070 -0.070 -0.070 0.000 0.000 -0.070
process[recruit_E].ycs_values{2007} 0.000 0.000 -0.245 -0.245 -0.245 0.000 0.000 -0.245
process[recruit_E].ycs_values{2008} 0.000 0.000 -0.500 -0.500 -0.500 0.000 0.000 -0.500
process[recruit_E].ycs_values{2009} 0.000 0.000 0.206 0.206 0.206 0.000 0.000 0.206
process[recruit_E].ycs_values{2010} 0.000 0.000 -1.074 -1.074 -1.074 0.000 0.000 -1.074
process[recruit_E].ycs_values{2011} 0.000 0.000 -0.017 -0.017 -0.017 0.000 0.000 -0.017
process[recruit_E].ycs_values{2012} 0.000 0.000 -0.293 -0.293 -0.293 0.001 0.001 -0.293
process[recruit_E].ycs_values{2013} 0.000 0.000 -0.355 -0.355 -0.355 0.000 -0.001 -0.355
process[recruit_E].ycs_values{2014} 0.000 0.000 -0.299 -0.299 -0.299 0.000 0.000 -0.299
process[recruit_E].ycs_values{2015} 0.000 0.000 2.231 2.231 2.231 -0.000 0.000 2.231
process[recruit_E].ycs_values{2016} 0.000 0.000 -0.529 -0.529 -0.529 0.000 0.000 -0.529
process[recruit_W].ycs_values{1975} 0.000 -0.000 0.365 0.365 0.365 -0.002 -0.001 0.365
process[recruit_W].ycs_values{1976} 0.000 -0.000 -0.977 -0.977 -0.977 0.000 0.000 -0.977
process[recruit_W].ycs_values{1977} 0.000 -0.000 2.210 2.210 2.210 -0.000 -0.001 2.210
process[recruit_W].ycs_values{1978} 0.000 0.000 2.311 2.311 2.311 0.000 0.000 2.311
process[recruit_W].ycs_values{1979} 0.000 -0.000 1.517 1.517 1.517 -0.000 0.000 1.517
process[recruit_W].ycs_values{1980} 0.000 0.000 1.061 1.061 1.061 0.000 -0.000 1.061
process[recruit_W].ycs_values{1981} 0.000 0.000 0.892 0.892 0.892 0.000 -0.000 0.892
process[recruit_W].ycs_values{1982} 0.000 -0.000 0.284 0.284 0.284 0.000 -0.000 0.284
process[recruit_W].ycs_values{1983} 0.000 0.000 0.133 0.133 0.133 -0.000 -0.000 0.133
process[recruit_W].ycs_values{1984} 0.000 -0.000 -0.016 -0.016 -0.016 0.000 0.000 -0.016
process[recruit_W].ycs_values{1985} 0.000 0.000 -0.257 -0.257 -0.257 0.000 0.000 -0.257
process[recruit_W].ycs_values{1986} 0.000 0.000 -0.021 -0.021 -0.021 0.000 -0.001 -0.021
process[recruit_W].ycs_values{1987} 0.000 0.000 0.305 0.305 0.305 0.000 0.000 0.305
process[recruit_W].ycs_values{1988} 0.000 0.000 0.229 0.229 0.229 -0.000 -0.000 0.229
process[recruit_W].ycs_values{1989} 0.000 0.000 0.160 0.160 0.160 0.000 -0.000 0.160
process[recruit_W].ycs_values{1990} 0.000 0.000 0.304 0.304 0.304 0.000 0.000 0.304
process[recruit_W].ycs_values{1991} 0.000 0.000 -0.093 -0.093 -0.093 -0.000 -0.000 -0.093
process[recruit_W].ycs_values{1992} 0.000 0.000 -0.017 -0.017 -0.017 0.000 -0.001 -0.017
process[recruit_W].ycs_values{1993} 0.000 -0.001 -0.185 -0.185 -0.185 -0.000 -0.000 -0.185
process[recruit_W].ycs_values{1994} 0.000 0.000 -0.377 -0.377 -0.377 -0.000 -0.000 -0.377
process[recruit_W].ycs_values{1995} 0.000 0.000 -0.392 -0.392 -0.392 0.000 -0.000 -0.392
process[recruit_W].ycs_values{1996} 0.000 -0.001 -0.440 -0.440 -0.440 0.000 0.000 -0.440
process[recruit_W].ycs_values{1997} 0.000 0.000 -0.644 -0.644 -0.644 -0.000 -0.001 -0.644
process[recruit_W].ycs_values{1998} 0.000 0.000 -1.251 -1.251 -1.251 0.000 0.000 -1.251
process[recruit_W].ycs_values{1999} 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
process[recruit_W].ycs_values{2000} 0.000 0.000 -0.581 -0.581 -0.581 0.000 -0.001 -0.581
process[recruit_W].ycs_values{2001} 0.000 -0.000 -0.446 -0.446 -0.446 0.000 0.000 -0.446
process[recruit_W].ycs_values{2002} 0.000 0.000 -0.007 -0.007 -0.007 -0.000 -0.000 -0.007
process[recruit_W].ycs_values{2003} 0.000 0.000 0.114 0.114 0.114 0.000 -0.000 0.114
process[recruit_W].ycs_values{2004} 0.000 -0.000 0.191 0.191 0.191 0.000 0.000 0.191
process[recruit_W].ycs_values{2005} 0.000 0.000 0.350 0.350 0.350 0.000 -0.000 0.350
process[recruit_W].ycs_values{2006} 0.000 -0.000 -0.091 -0.091 -0.091 -0.000 -0.000 -0.091
process[recruit_W].ycs_values{2007} 0.000 -0.000 -0.312 -0.312 -0.312 0.000 0.000 -0.312
process[recruit_W].ycs_values{2008} 0.000 -0.000 -0.198 -0.198 -0.198 -0.000 -0.000 -0.198
process[recruit_W].ycs_values{2009} 0.000 0.000 -0.934 -0.934 -0.934 -0.000 -0.000 -0.934
process[recruit_W].ycs_values{2010} 0.000 0.000 0.483 0.483 0.483 0.000 0.000 0.483
process[recruit_W].ycs_values{2011} 0.000 0.000 -0.796 -0.796 -0.796 -0.000 -0.000 -0.796
process[recruit_W].ycs_values{2012} 0.000 0.000 -0.674 -0.674 -0.674 0.000 0.000 -0.674
process[recruit_W].ycs_values{2013} 0.000 0.000 -0.172 -0.172 -0.172 0.000 -0.000 -0.172
process[recruit_W].ycs_values{2014} 0.000 0.000 -0.460 -0.460 -0.460 0.000 0.000 -0.460
process[recruit_W].ycs_values{2015} 0.000 0.000 -0.208 -0.208 -0.208 0.000 0.000 -0.208
process[recruit_W].ycs_values{2016} 0.000 0.000 -0.530 -0.530 -0.530 0.000 0.000 -0.530
selectivity[sel_Whome].v{1}             0.000 0.000 -1.833 -1.833 -1.833 0.000 0.000 -1.833
selectivity[sel_Whome].v{2}             0.000 -0.000 -8.027 -8.027 -8.027 0.000 0.001 -8.027
selectivity[sel_Whome].v{3}             0.000 0.000 -3.584 -3.584 -3.584 0.000 -0.000 -3.584
selectivity[sel_Whome].v{4}             0.000 -0.002 -4.688 -4.688 -4.688 -0.001 0.001 -4.688
selectivity[sel_Whome].v{5}             0.000 0.001 -6.974 -6.974 -6.974 0.001 0.001 -6.974
selectivity[sel_Whome].v{6}             0.000 -0.002 -5.939 -5.939 -5.939 -0.002 0.000 -5.939
selectivity[sel_Whome].v{7}             0.000 0.001 21.152 21.152 21.152 0.001 0.004 21.152
selectivity[sel_Espmg].v{1}             0.000 -0.000 -0.332 -0.332 -0.332 0.000 0.000 -0.332
selectivity[sel_Espmg].v{2}             0.000 0.000 -0.683 -0.683 -0.683 0.000 0.000 -0.683
selectivity[sel_Espmg].v{3}             0.000 0.000 -1.028 -1.028 -1.028 0.000 0.000 -1.028
selectivity[sel_Espmg].v{4}             0.000 0.000 -1.354 -1.354 -1.354 0.000 0.000 -1.354
selectivity[sel_Espmg].v{5}             0.000 0.000 -1.563 -1.563 -1.563 0.000 0.000 -1.563
selectivity[sel_Espmg].v{6}             0.000 0.000 -1.436 -1.436 -1.436 0.000 0.000 -1.436
selectivity[sel_Espmg].v{7}             0.000 0.000 -1.389 -1.389 -1.389 0.000 -0.000 -1.389
selectivity[sel_Espmg].v{8}             0.000 0.000 0.528 0.528 0.528 0.000 0.000 0.528
selectivity[sel_Wspmg].v{1}             0.000 0.000 -0.552 -0.552 -0.552 0.001 0.001 -0.552
selectivity[sel_Wspmg].v{2}             0.000 0.000 1.242 1.242 1.242 0.000 0.000 1.242
selectivity[sel_Wspmg].v{3}             0.000 0.000 -0.029 -0.029 -0.029 0.000 0.000 -0.029
selectivity[sel_Wspmg].v{4}             0.000 0.000 0.004 0.004 0.004 0.000 0.000 0.004
selectivity[sel_Wspmg].v{5}             0.000 0.000 -0.092 -0.092 -0.092 0.000 0.000 -0.092
selectivity[sel_Wspmg].v{6}             0.000 0.000 -0.409 -0.409 -0.409 0.000 0.000 -0.409
selectivity[sel_Wspmg].v{7}             0.000 0.000 -1.171 -1.171 -1.171 -0.000 0.000 -1.171
selectivity[sel_Wspmg].v{8}             0.000 0.000 0.875 0.875 0.875 0.000 0.000 0.875
selectivity[Enspsl].mu               0.000 0.000 0.168 0.168 0.168 0.000 0.000 0.168
selectivity[Enspsl].sigma_l          0.000 0.000 0.112 0.112 0.112 0.000 0.000 0.112
selectivity[Enspsl].sigma_r          0.000 0.000 68.573 68.573 68.573 0.000 0.000 68.573
selectivity[Wnspsl].mu               0.000 0.000 -0.240 -0.240 -0.240 0.000 0.000 -0.240
selectivity[Wnspsl].sigma_l          0.000 0.000 -2.203 -2.203 -2.203 -0.000 -0.000 -2.203
selectivity[Wnspsl].sigma_r          0.000 0.003 73.242 73.242 73.242 0.001 0.000 73.242
selectivity[Espsl].mu               0.000 0.000 3.357 3.357 3.357 0.000 0.000 3.357
selectivity[Espsl].sigma_l          0.000 0.001 -7.454 -7.454 -7.454 0.000 0.000 -7.454
selectivity[Espsl].sigma_r          0.000 0.000 1.108 1.108 1.108 -0.000 0.000 1.108
selectivity[CRsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
selectivity[CRsl].sigma_l          0.000 -0.000 1.081 45.187 45.187 0.000 -0.000 1.073
selectivity[CRsl].sigma_r          0.000 0.000 7.851 7.851 7.851 -0.001 0.000 7.851
selectivity[SAsl].mu               0.000 0.000 4.144 4.144 4.144 0.000 0.000 4.144
selectivity[SAsl].sigma_l          0.000 0.000 -0.700 -0.700 -0.700 0.000 0.000 -0.700
selectivity[SAsl].sigma_r          0.000 0.000 -31.519 -31.519 -31.519 0.000 0.000 -31.519

CASAL objective function component values
Component Base_Model Sensitivity_1
CRsumbio -31.030 -31.030
CSacous -9.835 -9.836
SAautbio -3.984 -3.984
SAsumbio -6.146 -6.146
WCacous -5.916 -5.916
CRsumage 323.800 323.800
SAautage 35.120 35.120
SAsumage 221.100 221.100
EnspOLF 24.280 24.280
Enspage 256.100 256.100
Espage 581.500 581.500
WnspOLF 70.250 70.250
Wnspage 157.000 157.000
Wspage 364.800 364.800
pspawn -13.130 -13.130
pspawn_1993 -6.015 -6.015
prior_on_q[CSacous].q -0.839 -0.839
prior_on_q[WCacous].q -1.202 -1.202
prior_on_q[CRsum].q -2.207 -2.207
prior_on_q[SAsum].q -1.557 -1.557
prior_on_q[SAaut].q -1.762 -1.762
prior_on_relative_abundance[CRsumbio].cv_process_error 0.000 0.000
prior_on_relative_abundance[SAsumbio].cv_process_error 0.000 0.000
prior_on_log_B0_total 0.000 0.000
prior_on_B0_prop_stock1 12.560 12.560
prior_on_natural_mortality.all -1.217 -1.217
prior_on_selectivity[Wspsl].shift_a 0.378 0.378
prior_on_recruitment[E].YCS -13.750 -13.750
prior_on_recruitment[W].YCS -1.785 -1.785
prior_on_migration[Whome].rates_all 0.000 0.000
prior_on_migration[Espmg].rates_all 0.000 0.000
prior_on_migration[Wspmg].rates_all 0.000 0.000
prior_on_selectivity[Enspsl].all 0.000 0.000
prior_on_selectivity[Wnspsl].all 0.000 0.000
prior_on_selectivity[Espsl].all 0.000 0.000
prior_on_selectivity[CRsl].all 0.000 0.000
prior_on_selectivity[SAsl].all 0.000 0.000
Umax_Ensp1 0.000 0.000
Umax_Ensp2 0.000 0.000
Umax_Wnsp1 0.000 0.000
Umax_Wnsp2 0.000 0.000
Umax_Esp 0.000 0.000
Umax_Wsp 0.000 0.000
YCS.eq.16 0.000 0.000
sp.migr 0.013 0.013
Total 1947.000 1947.000
Casal2 objective function component values
rownames betadiff_casal_flags_on betadiff_casal_flags_off betadiff_casal_flags_on_low_tol cppad_casal_flags_on cppad_casal_flags_off adolc_casal_flags_on adolc_casal_flags_off adolc_casal_flags_on_low_tol
observation->CSacous-1991                  2.342 2.342 2.404 2.404 2.404 2.342 2.342 2.404
observation->CSacous-1993                  -0.577 -0.577 -0.588 -0.588 -0.588 -0.577 -0.577 -0.588
observation->CSacous-1994                  -0.016 -0.016 -0.030 -0.030 -0.030 -0.016 -0.016 -0.030
observation->CSacous-1995                  -0.562 -0.562 -0.567 -0.567 -0.567 -0.562 -0.562 -0.567
observation->CSacous-1996                  -0.027 -0.026 0.013 0.013 0.013 -0.027 -0.027 0.013
observation->CSacous-1997                  -0.912 -0.912 -0.899 -0.899 -0.899 -0.912 -0.912 -0.899
observation->CSacous-1998                  -0.054 -0.054 -0.004 -0.004 -0.004 -0.054 -0.054 -0.004
observation->CSacous-1999                  -1.025 -1.025 -1.012 -1.012 -1.012 -1.025 -1.025 -1.012
observation->CSacous-2001                  -1.217 -1.217 -1.211 -1.211 -1.211 -1.217 -1.217 -1.211
observation->CSacous-2002                  -0.297 -0.297 -0.338 -0.338 -0.338 -0.297 -0.297 -0.338
observation->CSacous-2003                  -0.845 -0.845 -0.863 -0.863 -0.863 -0.845 -0.845 -0.863
observation->CSacous-2005                  -0.929 -0.929 -0.927 -0.927 -0.927 -0.929 -0.929 -0.927
observation->CSacous-2006                  -0.939 -0.939 -0.950 -0.950 -0.950 -0.939 -0.939 -0.950
observation->CSacous-2007                  -0.623 -0.623 -0.600 -0.600 -0.600 -0.623 -0.623 -0.600
observation->CSacous-2008                  -1.094 -1.094 -1.125 -1.125 -1.125 -1.094 -1.094 -1.125
observation->CSacous-2009                  -0.185 -0.185 -0.110 -0.110 -0.110 -0.185 -0.185 -0.110
observation->CSacous-2011                  -1.021 -1.021 -1.000 -1.000 -1.000 -1.021 -1.021 -1.000
observation->CSacous-2013                  -0.892 -0.892 -0.855 -0.855 -0.855 -0.892 -0.892 -0.855
observation->CSacous-2015                  -0.190 -0.190 -0.150 -0.150 -0.150 -0.190 -0.190 -0.150
observation->CSacous-2017                  -1.020 -1.020 -1.021 -1.021 -1.021 -1.020 -1.020 -1.021
observation->WCacous-1988                  -0.588 -0.588 -0.588 -0.588 -0.588 -0.588 -0.588 -0.588
observation->WCacous-1989                  -0.183 -0.183 -0.168 -0.168 -0.168 -0.183 -0.183 -0.168
observation->WCacous-1990                  -0.332 -0.332 -0.327 -0.327 -0.327 -0.332 -0.332 -0.327
observation->WCacous-1991                  -0.425 -0.425 -0.425 -0.425 -0.425 -0.425 -0.425 -0.425
observation->WCacous-1992                  -0.744 -0.744 -0.744 -0.744 -0.744 -0.744 -0.744 -0.744
observation->WCacous-1993                  -0.369 -0.369 -0.374 -0.374 -0.374 -0.369 -0.369 -0.374
observation->WCacous-1997                  -0.054 -0.054 -0.043 -0.043 -0.043 -0.054 -0.054 -0.043
observation->WCacous-2000                  -1.265 -1.265 -1.272 -1.272 -1.272 -1.265 -1.265 -1.272
observation->WCacous-2012                  -0.906 -0.906 -0.896 -0.896 -0.896 -0.906 -0.906 -0.896
observation->WCacous-2013                  -1.079 -1.079 -1.079 -1.079 -1.079 -1.079 -1.079 -1.079
observation->CRsumbio-1992                  -1.634 -1.634 -1.647 -1.647 -1.647 -1.634 -1.634 -1.647
observation->CRsumbio-1993                  0.040 0.040 0.043 0.043 0.043 0.040 0.040 0.043
observation->CRsumbio-1994                  -1.760 -1.760 -1.760 -1.760 -1.760 -1.760 -1.760 -1.760
observation->CRsumbio-1995                  -1.425 -1.425 -1.406 -1.406 -1.406 -1.425 -1.425 -1.406
observation->CRsumbio-1996                  -1.690 -1.690 -1.699 -1.699 -1.699 -1.690 -1.690 -1.699
observation->CRsumbio-1997                  -0.607 -0.607 -0.635 -0.635 -0.635 -0.607 -0.607 -0.635
observation->CRsumbio-1998                  -1.203 -1.203 -1.210 -1.210 -1.210 -1.203 -1.203 -1.210
observation->CRsumbio-1999                  -0.953 -0.953 -0.919 -0.919 -0.919 -0.953 -0.953 -0.919
observation->CRsumbio-2000                  -1.629 -1.629 -1.632 -1.632 -1.632 -1.629 -1.629 -1.632
observation->CRsumbio-2001                  -1.773 -1.773 -1.775 -1.775 -1.775 -1.773 -1.773 -1.775
observation->CRsumbio-2002                  -1.209 -1.209 -1.206 -1.206 -1.206 -1.209 -1.209 -1.206
observation->CRsumbio-2003                  -1.749 -1.749 -1.744 -1.744 -1.744 -1.749 -1.749 -1.744
observation->CRsumbio-2004                  -0.818 -0.818 -0.803 -0.803 -0.803 -0.818 -0.818 -0.803
observation->CRsumbio-2005                  -1.471 -1.471 -1.477 -1.477 -1.477 -1.471 -1.471 -1.477
observation->CRsumbio-2006                  -1.314 -1.314 -1.306 -1.306 -1.306 -1.314 -1.314 -1.306
observation->CRsumbio-2007                  -0.727 -0.727 -0.756 -0.756 -0.756 -0.727 -0.727 -0.756
observation->CRsumbio-2008                  -0.373 -0.373 -0.402 -0.402 -0.402 -0.373 -0.373 -0.402
observation->CRsumbio-2009                  -0.586 -0.586 -0.559 -0.559 -0.559 -0.586 -0.586 -0.559
observation->CRsumbio-2010                  -1.349 -1.349 -1.359 -1.359 -1.359 -1.349 -1.349 -1.359
observation->CRsumbio-2011                  -1.096 -1.096 -1.105 -1.105 -1.105 -1.096 -1.096 -1.105
observation->CRsumbio-2012                  -1.439 -1.439 -1.448 -1.448 -1.448 -1.439 -1.439 -1.448
observation->CRsumbio-2013                  -1.494 -1.494 -1.491 -1.491 -1.491 -1.494 -1.494 -1.491
observation->CRsumbio-2014                  -1.768 -1.768 -1.770 -1.770 -1.770 -1.768 -1.768 -1.770
observation->CRsumbio-2016                  -1.410 -1.410 -1.411 -1.411 -1.411 -1.410 -1.410 -1.411
observation->CRsumbio-2018                  -1.552 -1.552 -1.554 -1.554 -1.554 -1.552 -1.552 -1.554
observation->SAsumbio-1992                  -0.597 -0.597 -0.588 -0.588 -0.588 -0.597 -0.597 -0.588
observation->SAsumbio-1993                  -0.314 -0.314 -0.309 -0.309 -0.309 -0.314 -0.314 -0.309
observation->SAsumbio-1994                  0.196 0.196 0.186 0.186 0.186 0.196 0.196 0.186
observation->SAsumbio-2001                  -0.835 -0.835 -0.822 -0.822 -0.822 -0.835 -0.835 -0.822
observation->SAsumbio-2002                  -0.794 -0.794 -0.777 -0.777 -0.777 -0.794 -0.794 -0.777
observation->SAsumbio-2003                  -0.837 -0.837 -0.825 -0.825 -0.825 -0.837 -0.837 -0.825
observation->SAsumbio-2004                  0.732 0.732 0.734 0.734 0.734 0.732 0.732 0.734
observation->SAsumbio-2005                  -0.258 -0.258 -0.218 -0.218 -0.218 -0.258 -0.258 -0.218
observation->SAsumbio-2006                  -0.600 -0.600 -0.558 -0.558 -0.558 -0.600 -0.600 -0.558
observation->SAsumbio-2007                  0.636 0.636 0.654 0.654 0.654 0.636 0.636 0.654
observation->SAsumbio-2008                  -0.461 -0.461 -0.462 -0.462 -0.462 -0.461 -0.461 -0.462
observation->SAsumbio-2009                  -0.585 -0.585 -0.583 -0.583 -0.583 -0.585 -0.585 -0.583
observation->SAsumbio-2010                  -0.143 -0.143 -0.147 -0.147 -0.147 -0.143 -0.143 -0.147
observation->SAsumbio-2012                  -0.848 -0.848 -0.835 -0.835 -0.835 -0.848 -0.848 -0.835
observation->SAsumbio-2013                  -0.797 -0.797 -0.786 -0.786 -0.786 -0.797 -0.797 -0.786
observation->SAsumbio-2015                  -0.200 -0.200 -0.189 -0.189 -0.189 -0.200 -0.200 -0.189
observation->SAsumbio-2017                  -0.638 -0.638 -0.620 -0.620 -0.620 -0.638 -0.638 -0.620
observation->SAautbio-1992                  -1.459 -1.459 -1.450 -1.450 -1.450 -1.459 -1.459 -1.450
observation->SAautbio-1996                  -1.233 -1.233 -1.250 -1.250 -1.250 -1.233 -1.233 -1.250
observation->SAautbio-1998                  -1.308 -1.308 -1.284 -1.284 -1.284 -1.308 -1.308 -1.284
observation->Espage-1988                  19.793 19.793 19.640 19.640 19.640 19.793 19.793 19.640
observation->Espage-1989                  15.858 15.858 15.862 15.862 15.862 15.858 15.858 15.862
observation->Espage-1990                  21.488 21.488 21.446 21.446 21.446 21.488 21.488 21.446
observation->Espage-1991                  20.641 20.641 20.612 20.612 20.612 20.641 20.641 20.612
observation->Espage-1992                  24.089 24.089 24.020 24.020 24.020 24.089 24.089 24.020
observation->Espage-1993                  19.305 19.305 19.328 19.328 19.328 19.305 19.305 19.328
observation->Espage-1994                  20.528 20.528 20.503 20.503 20.503 20.528 20.528 20.503
observation->Espage-1995                  22.541 22.541 22.559 22.559 22.559 22.541 22.541 22.559
observation->Espage-1996                  18.590 18.590 18.577 18.577 18.577 18.590 18.590 18.577
observation->Espage-1997                  20.974 20.974 20.964 20.964 20.964 20.974 20.974 20.964
observation->Espage-1998                  20.587 20.587 20.611 20.611 20.611 20.587 20.587 20.611
observation->Espage-1999                  22.886 22.886 22.862 22.862 22.862 22.886 22.886 22.862
observation->Espage-2000                  23.321 23.321 23.314 23.314 23.314 23.321 23.321 23.314
observation->Espage-2001                  20.735 20.735 20.773 20.773 20.773 20.735 20.735 20.773
observation->Espage-2002                  26.248 26.248 26.287 26.287 26.287 26.248 26.248 26.287
observation->Espage-2003                  19.120 19.120 19.120 19.120 19.120 19.120 19.120 19.120
observation->Espage-2004                  22.692 22.692 22.642 22.642 22.642 22.692 22.692 22.642
observation->Espage-2005                  26.122 26.122 26.070 26.070 26.070 26.122 26.122 26.070
observation->Espage-2006                  23.242 23.242 23.149 23.149 23.149 23.242 23.242 23.149
observation->Espage-2007                  25.274 25.274 25.210 25.210 25.210 25.274 25.274 25.210
observation->Espage-2008                  22.167 22.168 22.129 22.129 22.129 22.167 22.168 22.129
observation->Espage-2009                  18.691 18.691 18.690 18.690 18.690 18.691 18.691 18.690
observation->Espage-2010                  21.855 21.855 21.851 21.851 21.851 21.855 21.855 21.851
observation->Espage-2014                  20.616 20.616 20.648 20.648 20.648 20.616 20.616 20.648
observation->Espage-2015                  21.823 21.823 21.870 21.870 21.870 21.823 21.823 21.870
observation->Espage-2016                  21.204 21.204 21.204 21.204 21.204 21.204 21.204 21.204
observation->Espage-2017                  21.575 21.575 21.563 21.563 21.563 21.575 21.575 21.563
observation->Wspage-1988                  15.724 15.724 15.753 15.753 15.753 15.724 15.724 15.753
observation->Wspage-1989                  11.555 11.555 11.566 11.566 11.566 11.555 11.555 11.566
observation->Wspage-1990                  11.752 11.752 11.790 11.790 11.790 11.752 11.752 11.790
observation->Wspage-1991                  13.036 13.036 13.051 13.051 13.051 13.036 13.036 13.051
observation->Wspage-1992                  10.178 10.178 10.170 10.170 10.170 10.178 10.178 10.170
observation->Wspage-1993                  10.569 10.569 10.579 10.579 10.579 10.569 10.569 10.579
observation->Wspage-1994                  9.918 9.918 9.924 9.924 9.924 9.918 9.918 9.924
observation->Wspage-1995                  13.403 13.403 13.396 13.396 13.396 13.403 13.403 13.396
observation->Wspage-1996                  11.840 11.840 11.844 11.844 11.844 11.840 11.840 11.844
observation->Wspage-1997                  11.230 11.230 11.243 11.243 11.243 11.230 11.230 11.243
observation->Wspage-1998                  11.761 11.761 11.762 11.762 11.762 11.761 11.761 11.762
observation->Wspage-1999                  11.975 11.975 11.981 11.981 11.981 11.975 11.975 11.981
observation->Wspage-2000                  11.256 11.256 11.260 11.260 11.260 11.256 11.256 11.260
observation->Wspage-2001                  12.179 12.179 12.201 12.201 12.201 12.179 12.179 12.201
observation->Wspage-2002                  9.731 9.731 9.745 9.745 9.745 9.731 9.731 9.745
observation->Wspage-2003                  9.555 9.555 9.556 9.556 9.556 9.555 9.555 9.556
observation->Wspage-2004                  14.340 14.340 14.304 14.304 14.304 14.340 14.340 14.304
observation->Wspage-2005                  14.932 14.932 14.977 14.977 14.977 14.932 14.932 14.977
observation->Wspage-2006                  13.817 13.817 13.872 13.872 13.872 13.817 13.817 13.872
observation->Wspage-2007                  11.498 11.498 11.516 11.516 11.516 11.498 11.498 11.516
observation->Wspage-2008                  12.195 12.195 12.194 12.194 12.194 12.195 12.195 12.194
observation->Wspage-2009                  12.631 12.631 12.594 12.594 12.594 12.631 12.631 12.594
observation->Wspage-2010                  11.316 11.316 11.299 11.299 11.299 11.316 11.316 11.299
observation->Wspage-2011                  11.154 11.154 11.137 11.137 11.137 11.154 11.154 11.137
observation->Wspage-2012                  11.867 11.867 11.860 11.860 11.860 11.867 11.867 11.860
observation->Wspage-2013                  11.041 11.041 11.065 11.065 11.065 11.041 11.041 11.065
observation->Wspage-2014                  12.944 12.944 12.941 12.941 12.941 12.944 12.944 12.941
observation->Wspage-2015                  13.134 13.134 13.101 13.101 13.101 13.134 13.134 13.101
observation->Wspage-2016                  14.272 14.272 14.273 14.273 14.273 14.272 14.272 14.273
observation->Wspage-2017                  13.745 13.745 13.797 13.797 13.797 13.745 13.745 13.797
observation->EnspOLF-1992                  4.397 4.397 4.388 4.388 4.388 4.397 4.397 4.388
observation->EnspOLF-1994                  6.647 6.647 6.678 6.678 6.678 6.647 6.647 6.678
observation->EnspOLF-1996                  7.897 7.897 7.906 7.906 7.906 7.897 7.897 7.906
observation->EnspOLF-1998                  5.301 5.301 5.303 5.303 5.303 5.301 5.301 5.303
observation->Enspage-1999                  14.332 14.332 14.287 14.287 14.287 14.332 14.332 14.287
observation->Enspage-2000                  13.975 13.975 13.960 13.960 13.960 13.975 13.975 13.960
observation->Enspage-2001                  13.979 13.979 13.929 13.929 13.929 13.979 13.979 13.929
observation->Enspage-2002                  12.081 12.081 12.078 12.078 12.078 12.081 12.081 12.078
observation->Enspage-2003                  9.700 9.700 9.706 9.706 9.706 9.700 9.700 9.706
observation->Enspage-2004                  12.966 12.966 12.986 12.986 12.986 12.966 12.966 12.986
observation->Enspage-2005                  11.012 11.012 11.009 11.009 11.009 11.012 11.012 11.009
observation->Enspage-2006                  12.741 12.741 12.712 12.712 12.712 12.741 12.741 12.712
observation->Enspage-2007                  11.061 11.061 11.052 11.052 11.052 11.061 11.061 11.052
observation->Enspage-2008                  12.104 12.104 12.101 12.101 12.101 12.104 12.104 12.101
observation->Enspage-2009                  10.056 10.056 10.055 10.055 10.055 10.056 10.056 10.055
observation->Enspage-2010                  17.581 17.581 17.627 17.627 17.627 17.581 17.581 17.627
observation->Enspage-2011                  13.399 13.399 13.412 13.412 13.412 13.399 13.399 13.412
observation->Enspage-2012                  13.149 13.149 13.134 13.134 13.134 13.149 13.149 13.134
observation->Enspage-2013                  16.694 16.694 16.659 16.659 16.659 16.694 16.694 16.659
observation->Enspage-2014                  13.869 13.869 13.870 13.870 13.870 13.869 13.869 13.870
observation->Enspage-2015                  12.760 12.760 12.776 12.776 12.776 12.760 12.760 12.776
observation->Enspage-2016                  19.224 19.224 19.203 19.203 19.203 19.224 19.224 19.203
observation->Enspage-2017                  15.562 15.562 15.511 15.511 15.511 15.562 15.562 15.511
observation->WnspOLF-1992                  10.122 10.122 10.129 10.129 10.129 10.122 10.122 10.129
observation->WnspOLF-1993                  9.045 9.045 8.991 8.991 8.991 9.045 9.045 8.991
observation->WnspOLF-1994                  15.930 15.930 15.893 15.893 15.893 15.930 15.930 15.893
observation->WnspOLF-1996                  9.788 9.788 9.752 9.752 9.752 9.788 9.788 9.752
observation->WnspOLF-1999                  11.553 11.554 11.593 11.593 11.593 11.554 11.553 11.593
observation->WnspOLF-2000                  13.812 13.812 13.892 13.892 13.892 13.812 13.812 13.892
observation->Wnspage-2001                  8.032 8.032 7.994 7.994 7.994 8.032 8.032 7.994
observation->Wnspage-2002                  8.715 8.715 8.701 8.701 8.701 8.715 8.715 8.701
observation->Wnspage-2003                  10.473 10.473 10.507 10.507 10.507 10.473 10.473 10.507
observation->Wnspage-2004                  7.155 7.155 7.140 7.140 7.140 7.155 7.155 7.140
observation->Wnspage-2006                  9.589 9.589 9.551 9.551 9.551 9.589 9.589 9.551
observation->Wnspage-2007                  10.861 10.861 10.822 10.822 10.822 10.861 10.861 10.822
observation->Wnspage-2008                  12.425 12.425 12.435 12.435 12.435 12.425 12.425 12.435
observation->Wnspage-2009                  14.716 14.716 14.790 14.790 14.790 14.716 14.716 14.790
observation->Wnspage-2010                  11.405 11.405 11.370 11.370 11.370 11.405 11.405 11.370
observation->Wnspage-2011                  11.267 11.267 11.275 11.275 11.275 11.267 11.267 11.275
observation->Wnspage-2012                  10.454 10.454 10.465 10.465 10.465 10.454 10.454 10.465
observation->Wnspage-2013                  13.633 13.633 13.634 13.634 13.634 13.633 13.633 13.634
observation->Wnspage-2014                  12.608 12.608 12.597 12.597 12.597 12.608 12.608 12.597
observation->Wnspage-2016                  15.687 15.687 15.722 15.722 15.722 15.687 15.687 15.722
observation->CRsumage-1992                  15.584 15.584 15.566 15.566 15.566 15.584 15.584 15.566
observation->CRsumage-1993                  10.616 10.616 10.624 10.624 10.624 10.616 10.616 10.624
observation->CRsumage-1994                  18.170 18.170 18.130 18.130 18.130 18.170 18.170 18.130
observation->CRsumage-1995                  14.285 14.285 14.242 14.242 14.242 14.285 14.285 14.242
observation->CRsumage-1996                  11.567 11.567 11.607 11.607 11.607 11.567 11.567 11.607
observation->CRsumage-1997                  15.754 15.754 15.688 15.688 15.688 15.754 15.754 15.688
observation->CRsumage-1998                  14.690 14.690 14.690 14.690 14.690 14.690 14.690 14.690
observation->CRsumage-1999                  12.061 12.061 12.084 12.084 12.084 12.061 12.061 12.084
observation->CRsumage-2000                  14.323 14.323 14.283 14.283 14.283 14.323 14.323 14.283
observation->CRsumage-2001                  19.659 19.659 19.520 19.520 19.520 19.659 19.659 19.520
observation->CRsumage-2002                  10.969 10.969 10.960 10.960 10.960 10.969 10.969 10.960
observation->CRsumage-2003                  11.251 11.251 11.210 11.210 11.210 11.251 11.251 11.210
observation->CRsumage-2004                  9.553 9.553 9.561 9.561 9.561 9.553 9.553 9.561
observation->CRsumage-2005                  12.753 12.753 12.654 12.654 12.654 12.753 12.753 12.654
observation->CRsumage-2006                  10.316 10.316 10.317 10.317 10.317 10.316 10.316 10.317
observation->CRsumage-2007                  13.562 13.562 13.504 13.504 13.504 13.562 13.562 13.504
observation->CRsumage-2008                  11.661 11.661 11.639 11.639 11.639 11.661 11.661 11.639
observation->CRsumage-2009                  12.006 12.006 11.965 11.965 11.965 12.006 12.006 11.965
observation->CRsumage-2010                  11.048 11.048 11.055 11.055 11.055 11.048 11.048 11.055
observation->CRsumage-2011                  12.579 12.579 12.571 12.571 12.571 12.579 12.579 12.571
observation->CRsumage-2012                  17.228 17.228 17.141 17.141 17.141 17.228 17.228 17.141
observation->CRsumage-2013                  11.843 11.843 11.822 11.822 11.822 11.843 11.843 11.822
observation->CRsumage-2014                  11.286 11.286 11.271 11.271 11.271 11.286 11.286 11.271
observation->CRsumage-2016                  9.866 9.866 9.847 9.847 9.847 9.866 9.866 9.847
observation->CRsumage-2018                  11.931 11.931 11.895 11.895 11.895 11.931 11.931 11.895
observation->SAsumage-1992                  12.246 12.246 12.269 12.269 12.269 12.246 12.246 12.269
observation->SAsumage-1993                  12.470 12.470 12.502 12.502 12.502 12.470 12.470 12.502
observation->SAsumage-1994                  10.811 10.811 10.818 10.818 10.818 10.811 10.811 10.818
observation->SAsumage-2001                  12.749 12.749 12.839 12.839 12.839 12.749 12.749 12.839
observation->SAsumage-2002                  12.209 12.209 12.254 12.254 12.254 12.209 12.209 12.254
observation->SAsumage-2003                  13.386 13.386 13.386 13.386 13.386 13.386 13.386 13.386
observation->SAsumage-2004                  11.067 11.067 11.005 11.005 11.005 11.067 11.067 11.005
observation->SAsumage-2005                  15.278 15.278 15.386 15.386 15.386 15.278 15.278 15.386
observation->SAsumage-2006                  14.112 14.112 14.078 14.078 14.078 14.112 14.112 14.078
observation->SAsumage-2007                  10.649 10.649 10.639 10.639 10.639 10.649 10.649 10.639
observation->SAsumage-2008                  13.771 13.771 13.836 13.836 13.836 13.771 13.771 13.836
observation->SAsumage-2009                  15.513 15.513 15.530 15.530 15.530 15.513 15.513 15.530
observation->SAsumage-2010                  15.081 15.081 15.130 15.130 15.130 15.081 15.081 15.130
observation->SAsumage-2012                  13.437 13.437 13.479 13.479 13.479 13.437 13.437 13.479
observation->SAsumage-2013                  11.954 11.954 11.982 11.982 11.982 11.954 11.954 11.982
observation->SAsumage-2015                  13.522 13.522 13.540 13.540 13.540 13.522 13.522 13.540
observation->SAsumage-2017                  12.492 12.492 12.478 12.478 12.478 12.492 12.492 12.478
observation->SAautage-1992                  11.809 11.809 11.857 11.857 11.857 11.809 11.809 11.857
observation->SAautage-1996                  10.449 10.449 10.426 10.426 10.426 10.449 10.449 10.426
observation->SAautage-1998                  12.809 12.809 12.835 12.835 12.835 12.809 12.809 12.835
observation->pspawn_1993                  -6.017 -6.017 -6.015 -6.015 -6.015 -6.017 -6.017 -6.015
observation->pspawn-1992                  -4.848 -4.848 -4.829 -4.829 -4.829 -4.848 -4.848 -4.829
observation->pspawn-1998                  -8.284 -8.284 -8.300 -8.300 -8.300 -8.284 -8.284 -8.300
prior->CSacousq->catchability[CSacous].q                -0.849 -0.849 -0.839 -0.839 -0.839 -0.849 -0.849 -0.839
prior->WCacousq->catchability[WCacous].q                -1.162 -1.162 -1.202 -1.202 -1.202 -1.162 -1.162 -1.202
prior->CRsumq->catchability[CRsum].q                -2.155 -2.155 -2.207 -2.207 -2.207 -2.155 -2.155 -2.207
prior->SAsumq->catchability[SAsum].q                -1.762 -1.762 -1.557 -1.557 -1.557 -1.762 -1.762 -1.557
prior->SAautq->catchability[SAaut].q                -1.913 -1.913 -1.762 -1.762 -1.762 -1.913 -1.913 -1.762
prior->CR_process_error->observation[CRsumbio].process_error    0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->SA_process_error->observation[SAsumbio].process_error    0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->B0_E_with_total_log_b0_prior->process[recruit_E].b0               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->B0_W_with_proportion_prior->process[recruit_W].b0               12.544 12.544 12.555 12.555 12.555 12.544 12.544 12.555
prior->M_all->process[Instant_mortality].m{west.sa}              -1.085 -1.085 -1.217 -1.217 -1.217 -1.085 -1.085 -1.217
prior->Wspsl_shift_param->time_varying[shifted_mu].a                0.420 0.420 0.378 0.378 0.378 0.420 0.420 0.378
prior->YCS_E->process[recruit_E].ycs_values{1975} -0.624 -0.624 -0.623 -0.623 -0.623 -0.624 -0.624 -0.623
prior->YCS_E->process[recruit_E].ycs_values{1976} -0.316 -0.316 -0.319 -0.319 -0.319 -0.316 -0.316 -0.319
prior->YCS_E->process[recruit_E].ycs_values{1977} -0.227 -0.227 -0.238 -0.238 -0.238 -0.227 -0.227 -0.238
prior->YCS_E->process[recruit_E].ycs_values{1978} 0.654 0.654 0.615 0.615 0.615 0.654 0.654 0.615
prior->YCS_E->process[recruit_E].ycs_values{1979} 0.084 0.084 0.062 0.062 0.062 0.084 0.084 0.062
prior->YCS_E->process[recruit_E].ycs_values{1980} -0.630 -0.630 -0.627 -0.627 -0.627 -0.630 -0.630 -0.627
prior->YCS_E->process[recruit_E].ycs_values{1981} -0.619 -0.619 -0.623 -0.623 -0.623 -0.619 -0.619 -0.623
prior->YCS_E->process[recruit_E].ycs_values{1982} -0.550 -0.550 -0.542 -0.542 -0.542 -0.550 -0.550 -0.542
prior->YCS_E->process[recruit_E].ycs_values{1983} -0.627 -0.627 -0.630 -0.630 -0.630 -0.627 -0.627 -0.630
prior->YCS_E->process[recruit_E].ycs_values{1984} -0.591 -0.591 -0.596 -0.596 -0.596 -0.591 -0.591 -0.596
prior->YCS_E->process[recruit_E].ycs_values{1985} -0.641 -0.641 -0.642 -0.642 -0.642 -0.641 -0.641 -0.642
prior->YCS_E->process[recruit_E].ycs_values{1986} -0.408 -0.408 -0.400 -0.400 -0.400 -0.408 -0.408 -0.400
prior->YCS_E->process[recruit_E].ycs_values{1987} 0.142 0.142 0.135 0.135 0.135 0.142 0.142 0.135
prior->YCS_E->process[recruit_E].ycs_values{1988} 0.026 0.026 0.019 0.019 0.019 0.026 0.026 0.019
prior->YCS_E->process[recruit_E].ycs_values{1989} -0.631 -0.631 -0.632 -0.632 -0.632 -0.631 -0.631 -0.632
prior->YCS_E->process[recruit_E].ycs_values{1990} 0.159 0.159 0.158 0.158 0.158 0.159 0.159 0.158
prior->YCS_E->process[recruit_E].ycs_values{1991} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_E->process[recruit_E].ycs_values{1992} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_E->process[recruit_E].ycs_values{1993} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_E->process[recruit_E].ycs_values{1994} -0.530 -0.530 -0.525 -0.525 -0.525 -0.530 -0.530 -0.525
prior->YCS_E->process[recruit_E].ycs_values{1995} -0.534 -0.534 -0.538 -0.538 -0.538 -0.534 -0.534 -0.538
prior->YCS_E->process[recruit_E].ycs_values{1996} -0.574 -0.574 -0.577 -0.577 -0.577 -0.574 -0.574 -0.577
prior->YCS_E->process[recruit_E].ycs_values{1997} -0.623 -0.623 -0.622 -0.622 -0.622 -0.623 -0.623 -0.622
prior->YCS_E->process[recruit_E].ycs_values{1998} -0.512 -0.512 -0.513 -0.513 -0.513 -0.512 -0.512 -0.513
prior->YCS_E->process[recruit_E].ycs_values{1999} 2.014 2.014 2.014 2.014 2.014 2.014 2.014 2.014
prior->YCS_E->process[recruit_E].ycs_values{2000} -0.616 -0.616 -0.614 -0.614 -0.614 -0.616 -0.616 -0.614
prior->YCS_E->process[recruit_E].ycs_values{2001} -0.065 -0.065 -0.071 -0.071 -0.071 -0.065 -0.065 -0.071
prior->YCS_E->process[recruit_E].ycs_values{2002} -0.543 -0.543 -0.545 -0.545 -0.545 -0.543 -0.543 -0.545
prior->YCS_E->process[recruit_E].ycs_values{2003} -0.586 -0.586 -0.585 -0.585 -0.585 -0.586 -0.586 -0.585
prior->YCS_E->process[recruit_E].ycs_values{2004} -0.568 -0.568 -0.568 -0.568 -0.568 -0.568 -0.568 -0.568
prior->YCS_E->process[recruit_E].ycs_values{2005} -0.579 -0.579 -0.578 -0.578 -0.578 -0.579 -0.579 -0.578
prior->YCS_E->process[recruit_E].ycs_values{2006} -0.483 -0.483 -0.482 -0.482 -0.482 -0.483 -0.483 -0.482
prior->YCS_E->process[recruit_E].ycs_values{2007} -0.567 -0.567 -0.566 -0.566 -0.566 -0.567 -0.567 -0.566
prior->YCS_E->process[recruit_E].ycs_values{2008} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_E->process[recruit_E].ycs_values{2009} -0.561 -0.561 -0.562 -0.562 -0.562 -0.561 -0.561 -0.562
prior->YCS_E->process[recruit_E].ycs_values{2010} -0.031 -0.031 -0.046 -0.046 -0.046 -0.031 -0.031 -0.046
prior->YCS_E->process[recruit_E].ycs_values{2011} -0.408 -0.408 -0.408 -0.408 -0.408 -0.408 -0.408 -0.408
prior->YCS_E->process[recruit_E].ycs_values{2012} -0.019 -0.019 -0.023 -0.023 -0.023 -0.019 -0.019 -0.023
prior->YCS_E->process[recruit_E].ycs_values{2013} -0.238 -0.238 -0.242 -0.242 -0.242 -0.238 -0.238 -0.242
prior->YCS_E->process[recruit_E].ycs_values{2014} -0.317 -0.317 -0.314 -0.314 -0.314 -0.317 -0.317 -0.314
prior->YCS_E->process[recruit_E].ycs_values{2015} -0.279 -0.279 -0.302 -0.302 -0.302 -0.279 -0.279 -0.302
prior->YCS_E->process[recruit_E].ycs_values{2016} 0.363 0.363 0.373 0.373 0.373 0.363 0.363 0.373
prior->YCS_W->process[recruit_W].ycs_values{1975} -0.616 -0.616 -0.617 -0.617 -0.617 -0.616 -0.616 -0.617
prior->YCS_W->process[recruit_W].ycs_values{1976} -0.195 -0.195 -0.184 -0.184 -0.184 -0.195 -0.195 -0.184
prior->YCS_W->process[recruit_W].ycs_values{1977} -0.376 -0.376 -0.396 -0.396 -0.396 -0.376 -0.376 -0.396
prior->YCS_W->process[recruit_W].ycs_values{1978} -0.396 -0.396 -0.417 -0.417 -0.417 -0.396 -0.396 -0.417
prior->YCS_W->process[recruit_W].ycs_values{1979} -0.607 -0.607 -0.612 -0.612 -0.612 -0.607 -0.607 -0.612
prior->YCS_W->process[recruit_W].ycs_values{1980} -0.567 -0.567 -0.573 -0.573 -0.573 -0.567 -0.567 -0.573
prior->YCS_W->process[recruit_W].ycs_values{1981} -0.502 -0.502 -0.508 -0.508 -0.508 -0.502 -0.502 -0.508
prior->YCS_W->process[recruit_W].ycs_values{1982} -0.606 -0.606 -0.607 -0.607 -0.607 -0.606 -0.606 -0.607
prior->YCS_W->process[recruit_W].ycs_values{1983} -0.109 -0.109 -0.111 -0.111 -0.111 -0.109 -0.109 -0.111
prior->YCS_W->process[recruit_W].ycs_values{1984} -0.163 -0.163 -0.163 -0.163 -0.163 -0.163 -0.163 -0.163
prior->YCS_W->process[recruit_W].ycs_values{1985} -0.619 -0.619 -0.620 -0.620 -0.620 -0.619 -0.619 -0.620
prior->YCS_W->process[recruit_W].ycs_values{1986} -0.098 -0.098 -0.098 -0.098 -0.098 -0.098 -0.098 -0.098
prior->YCS_W->process[recruit_W].ycs_values{1987} 0.788 0.788 0.782 0.782 0.782 0.788 0.788 0.782
prior->YCS_W->process[recruit_W].ycs_values{1988} -0.252 -0.252 -0.255 -0.255 -0.255 -0.252 -0.252 -0.255
prior->YCS_W->process[recruit_W].ycs_values{1989} 1.207 1.207 1.211 1.211 1.211 1.207 1.207 1.211
prior->YCS_W->process[recruit_W].ycs_values{1990} 1.197 1.197 1.204 1.204 1.204 1.197 1.197 1.204
prior->YCS_W->process[recruit_W].ycs_values{1991} -0.081 -0.081 -0.080 -0.080 -0.080 -0.081 -0.081 -0.080
prior->YCS_W->process[recruit_W].ycs_values{1992} 0.480 0.480 0.480 0.480 0.480 0.480 0.480 0.480
prior->YCS_W->process[recruit_W].ycs_values{1993} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_W->process[recruit_W].ycs_values{1994} 0.014 0.014 0.020 0.020 0.020 0.014 0.014 0.020
prior->YCS_W->process[recruit_W].ycs_values{1995} -0.410 -0.410 -0.413 -0.413 -0.413 -0.410 -0.410 -0.413
prior->YCS_W->process[recruit_W].ycs_values{1996} -0.301 -0.301 -0.306 -0.306 -0.306 -0.301 -0.301 -0.306
prior->YCS_W->process[recruit_W].ycs_values{1997} -0.466 -0.466 -0.471 -0.471 -0.471 -0.466 -0.466 -0.471
prior->YCS_W->process[recruit_W].ycs_values{1998} -0.322 -0.322 -0.334 -0.334 -0.334 -0.322 -0.322 -0.334
prior->YCS_W->process[recruit_W].ycs_values{1999} 2.014 2.014 2.014 2.014 2.014 2.014 2.014 2.014
prior->YCS_W->process[recruit_W].ycs_values{2000} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_W->process[recruit_W].ycs_values{2001} 0.856 0.856 0.846 0.846 0.846 0.856 0.856 0.846
prior->YCS_W->process[recruit_W].ycs_values{2002} -0.222 -0.222 -0.222 -0.222 -0.222 -0.222 -0.222 -0.222
prior->YCS_W->process[recruit_W].ycs_values{2003} -0.612 -0.612 -0.612 -0.612 -0.612 -0.612 -0.612 -0.612
prior->YCS_W->process[recruit_W].ycs_values{2004} -0.570 -0.570 -0.571 -0.571 -0.571 -0.570 -0.570 -0.571
prior->YCS_W->process[recruit_W].ycs_values{2005} -0.574 -0.574 -0.576 -0.576 -0.576 -0.574 -0.574 -0.576
prior->YCS_W->process[recruit_W].ycs_values{2006} -0.280 -0.280 -0.279 -0.279 -0.279 -0.280 -0.280 -0.279
prior->YCS_W->process[recruit_W].ycs_values{2007} -0.438 -0.438 -0.436 -0.436 -0.436 -0.438 -0.438 -0.436
prior->YCS_W->process[recruit_W].ycs_values{2008} -0.464 -0.464 -0.463 -0.463 -0.463 -0.464 -0.464 -0.463
prior->YCS_W->process[recruit_W].ycs_values{2009} -0.514 -0.514 -0.508 -0.508 -0.508 -0.514 -0.514 -0.508
prior->YCS_W->process[recruit_W].ycs_values{2010} 0.071 0.071 0.078 0.078 0.078 0.071 0.071 0.078
prior->YCS_W->process[recruit_W].ycs_values{2011} 0.031 0.031 0.043 0.043 0.043 0.031 0.031 0.043
prior->YCS_W->process[recruit_W].ycs_values{2012} -0.050 -0.050 -0.059 -0.059 -0.059 -0.050 -0.050 -0.059
prior->YCS_W->process[recruit_W].ycs_values{2013} -0.489 -0.489 -0.490 -0.490 -0.490 -0.489 -0.489 -0.490
prior->YCS_W->process[recruit_W].ycs_values{2014} 1.730 1.730 1.742 1.742 1.742 1.730 1.730 1.742
prior->YCS_W->process[recruit_W].ycs_values{2015} 1.681 1.681 1.687 1.687 1.687 1.681 1.681 1.687
prior->YCS_W->process[recruit_W].ycs_values{2016} 0.363 0.363 0.373 0.373 0.373 0.363 0.363 0.373
prior->sel_Whome->selectivity[sel_Whome].v{1}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{2}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{3}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{4}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{5}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{6}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{7}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{1}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{2}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{3}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{4}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{5}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{6}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{7}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{8}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{1}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{2}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{3}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{4}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{5}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{6}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{7}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{8}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Enspsl_mu->selectivity[Enspsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Enspsl_s_l->selectivity[Enspsl].sigma_l          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Enspsl_s_r->selectivity[Enspsl].sigma_r          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Wnspsl_mu->selectivity[Wnspsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Wnspsl_s_l->selectivity[Wnspsl].sigma_l          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Wnspsl_s_r->selectivity[Wnspsl].sigma_r          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Espsl_mu->selectivity[Espsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Espsl_s_l->selectivity[Espsl].sigma_l          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Espsl_s_r->selectivity[Espsl].sigma_r          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->CRsl_mu->selectivity[CRsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->CRsl_s_l->selectivity[CRsl].sigma_l          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->CRsl_s_r->selectivity[CRsl].sigma_r          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->SAsl_mu->selectivity[SAsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->SAsl_s_l->selectivity[SAsl].sigma_l          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->SAsl_s_r->selectivity[SAsl].sigma_r          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
additional_prior->YCS.eq.16               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
additional_prior->sp.migr             0.009 0.009 0.013 0.013 0.013 0.009 0.009 0.013
jacobian->log_sum_b0                  0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
total_negloglike                  1946.810 1946.810 1946.540 1946.540 1946.540 1946.810 1946.810 1946.540

## [1] "CASAL base model convergence information"
## [1] "fmm: have converged: t = 8.24015e-007 f = 1946.54"                                                        
## [2] "Successful convergence in optimise"                                                                       
## [3] "Minimiser achieved convergence after 599 quasi-Newton iterations using 669 objective function evaluations"
## [1] ""
## [1] "CASAL sensitivity 1 model convergence information"
## [1] "fmm: step size too small. Indicates successful convergence (though this is not the textbook ideal convergence situation)"
## [2] "Successful convergence in optimise"                                                                                      
## [3] "Minimiser achieved convergence after 665 quasi-Newton iterations using 765 objective function evaluations"               
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model convergence information"
## [1] "fmm: have converged: t = 9.33053e-07 f = 1946.81"
## [2] "Successful convergence in optimise"              
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model convergence information"
## [1] "fmm: have converged: t = 8.43464e-07 f = 1946.81"
## [2] "Successful convergence in optimise"              
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model convergence information"
## [1] "fmm: step size too small. Indicates successful convergence (though this is not the textbook ideal convergence situation)"
## [2] "Successful convergence in optimise"                                                                                      
## [1] ""
## [1] "Casal2 cppad_casal_flags_on model convergence information"
##  [1] "Number of nonzeros in equality constraint Jacobian...:        0"
##  [2] "Number of nonzeros in inequality constraint Jacobian.:      133"
##  [3] "Number of nonzeros in Lagrangian Hessian.............:     8911"
##  [4] "Number of Iterations....: 72"                                   
##  [5] "Number of objective function evaluations             = 113"     
##  [6] "Number of objective gradient evaluations             = 73"      
##  [7] "Number of equality constraint evaluations            = 0"       
##  [8] "Number of inequality constraint evaluations          = 113"     
##  [9] "Number of equality constraint Jacobian evaluations   = 0"       
## [10] "Number of inequality constraint Jacobian evaluations = 73"      
## [11] "Number of Lagrangian Hessian evaluations             = 72"      
## [12] "EXIT: Optimal Solution Found."                                  
## [1] ""
## [1] "Casal2 cppad_casal_flags_off model convergence information"
##  [1] "Number of nonzeros in equality constraint Jacobian...:        0"
##  [2] "Number of nonzeros in inequality constraint Jacobian.:      133"
##  [3] "Number of nonzeros in Lagrangian Hessian.............:     8911"
##  [4] "Number of Iterations....: 72"                                   
##  [5] "Number of objective function evaluations             = 109"     
##  [6] "Number of objective gradient evaluations             = 73"      
##  [7] "Number of equality constraint evaluations            = 0"       
##  [8] "Number of inequality constraint evaluations          = 109"     
##  [9] "Number of equality constraint Jacobian evaluations   = 0"       
## [10] "Number of inequality constraint Jacobian evaluations = 73"      
## [11] "Number of Lagrangian Hessian evaluations             = 72"      
## [12] "EXIT: Optimal Solution Found."                                  
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model convergence information"
## character(0)
## [1] "CASAL model warnings"
##                  parameter estimate lower.bound upper.bound
## 1   recruitment[E].YCS[25]     0.06        0.06         8.6
## 2   recruitment[W].YCS[25]     0.06        0.06         8.6
## 3 selectivity[CRsl].all[1]        1           1          17
## 4 selectivity[CRsl].all[2]        1           1          50
## [1] ""
## [1] "CASAL sensitivity 1 model warnings"
##                  parameter estimate lower.bound upper.bound
## 1   recruitment[E].YCS[25]     0.06        0.06         8.6
## 2   recruitment[W].YCS[25]     0.06        0.06         8.6
## 3 selectivity[CRsl].all[1]        1           1          17
## 4 selectivity[CRsl].all[2]        1           1          50
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model warnings"
## $warnings_found
## [1] 10
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
## 
## $warning_6
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_7
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_8
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $warning_9
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model warnings"
## $warnings_found
## [1] 9
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
## 
## $warning_6
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_7
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $warning_8
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model warnings"
## $warnings_found
## [1] 6
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 cppad_casal_flags_on model warnings"
## $warnings_found
## [1] 6
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 cppad_casal_flags_off model warnings"
## $warnings_found
## [1] 6
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model warnings"
## $warnings_found
## [1] 10
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
## 
## $warning_6
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_7
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_8
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $warning_9
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model warnings"
## $warnings_found
## [1] 10
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
## 
## $warning_6
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_7
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_8
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $warning_9
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model warnings"
## $warnings_found
## [1] 6
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"

1.5 Matching of outputs

Time series comparisons with CASAL base model results

## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run cppad_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run cppad_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""

Derived quantities

SB0, SBcurrent, MSY, F_MSY, others...

1.6 Plots

Comparison plots

## [1] "CASAL base parameter correlation range (excluding 1.0): -0.9914 0.9969"

## [1] "CASAL sensitivity 1 parameter correlation range (excluding 1.0): -0.9324 0.9968"

## [1] "Casal2 betadiff_casal_flags_on parameter correlation range (excluding 1.0): -0.884821842084893 0.996596544550815"

## [1] "Casal2 betadiff_casal_flags_off parameter correlation range (excluding 1.0): -0.88701592973904 0.996724756023279"

## [1] "Casal2 betadiff_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.937968683348876 0.996618379611581"

## [1] "Casal2 cppad_casal_flags_on parameter correlation range (excluding 1.0): 0 0"

## [1] "Casal2 cppad_casal_flags_off parameter correlation range (excluding 1.0): 0 0"

## [1] "Casal2 adolc_casal_flags_on parameter correlation range (excluding 1.0): -0.891425610689569 0.996661761296964"

## [1] "Casal2 adolc_casal_flags_off parameter correlation range (excluding 1.0): -0.875107150272031 0.996550158370455"

## [1] "Casal2 adolc_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.936246952330836 0.996700193859853"